Bulk data. Robust enumeration of cell subsets from tissue expression profiles. Nat Methods. Note that, while immunedeconv itself is free (), you may need to obtain a license to use the individual methods.See the table below for more information. Robust enumeration of cell subsets from tissue expression profiles: Organism: Homo sapiens: Experiment type: Expression profiling by array: Summary: This SuperSeries is composed of the SubSeries listed below. Available methods, Licenses, Citations. doi: 10.1038/nmeth.3337. Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, et al. Robust enumeration of cell subsets from tissue expression profiles. Multiparameter noninvasive models that integrate pre-treatment ctDNA and peripheral immune features, together with early on-treatment ctDNA dynamics, show promise in predicting durable clinical response to immune checkpoint blockade treatment in patients with non-small cell lung cancer. Robust enumeration of cell subsets from tissue expression profiles. Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, Hoang CD, Diehn M, Alizadeh AA. 2015;12:453–7. Methods 12, 453–457 (2015)-----BisqueRNA: Jew, B. et al. Robust enumeration of cell subsets from tissue expression profiles. Altmetric Badge. Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, et al. Robust enumeration of cell subsets from tissue expression profiles. Overview of attention for article published in Nature Methods, March 2015. CAS Article PubMed PubMed Central Google Scholar 10. Nat. Gong T, Szustakowski JD. CIBERSORT is an analytical tool from the Alizadeh Lab developed by Newman et al. Mandal R, Şenbabaoğlu Y, Desrichard A, Havel JJ, Dalin MG, Riaz N, Lee K-W, Ganly I, Hakimi AA, Chan TA, et al. Robust enumeration of cell subsets from tissue expression profiles By Aaron M Newman, Chih Long Liu, Michael R Green, Andrew J Gentles, Weiguo Feng, Yue Xu, … CAS PubMed PubMed Central Article Google Scholar 9. Robust enumeration of cell subsets from tissue expression profiles. The dataset’s GEO entry (GSE50244) contains raw RNA-seq and sample annotation data. Nat Methods. The head and neck cancer immune landscape and its immunotherapeutic implications. 2015;12(5):453–7. Newman, A. M. et al. PubMed Abstract | CrossRef Full Text | Google Scholar We present Scaden, a deep neural network for cell deconvolution that uses gene expression information to infer the cellular composition of tissues. Nat Methods (2015) 12:453–7. Robust enumeration of cell subsets from tissue expression profiles. bioRxiv 669911 (2019) doi:10.1101/669911: deconvSeq Nat Methods. If you use this package in your work, please cite both our package and the method(s) you are using. 2015;12(5):453–7. 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